PlantcircBase

PlantcircBase collected publicly available circRNAs identified in recent years from O. sativa, A. thaliana, Zea mays, Solanum lycopersicum, and Hordeum vulgare, as well as unpublished circRNAs. PlantcircBase also provides other functions such as visualization of the structures of circRNA and prediction of circRNAs. PlantcircBase v7.0 contains 171,118 circRNAs from 21 plant species. Over 31,000 of the circRNAs have full-length sequences constructed based on analysis of 749 bulk RNA sequencing (RNA-seq) datasets downloaded from the public domain and Nanopore long-read sequencing results of rice RNAs newly generated in this study.

PlantcircBase is the world's first plant circular RNA (circRNA) database. It was established in 2017 by the team led by Professor Longjiang Fan from the College of Agriculture and Biotechnology, Zhejiang University, and mainly collects sequence information and related data of plant circRNAs. The database has collected over 170,000 circRNAs from 21 plant species, and provides analytical tools including browsing, searching, visualization and prediction for circRNAs.

搜集汇总

背景与挑战

背景概述

PlantcircBase是首个专注于植物环状RNA的数据库，由浙江大学团队于2017年创建，目前版本7.0收录了21种植物物种的超过17万条circRNA序列。该数据库提供浏览、搜索、可视化和预测等工具，支持植物环状RNA的全面分析。