Additional file 9: Table S5. of Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome

Assembled transcripts mapping statistics to the NCBI nucleotide database based on the originally unmapped (to Sscrofa10.2) RNA-Seq fragments. RNA-Seq unmapped fragments from four macrophage libraries were pooled, assembled as transcripts using SOAPdenovo-Trans-31kmer and aligned to the NCBI nucleotide database (NT). Statistics show the number of transcripts assembled, mapped to NT, and expressed at FPKM>0 or FPKM>10 with pig or human annotation present in at least one hit of the top five hits to NT. (XLSX 26 kb)本数据集为针对原本未比对至Sscrofa10.2版本猪参考基因组的RNA测序（RNA-Seq）片段所组装得到的转录本，其与NCBI核苷酸数据库（NCBI Nucleotide Database, NT）的比对情况统计信息。数据集制备流程为：收集4个巨噬细胞文库的未比对RNA-Seq片段并进行混合，使用SOAPdenovo-Trans-31kmer工具将其组装为转录本，随后将这些转录本比对至NCBI核苷酸数据库（NT）。本次统计涵盖三类指标：组装得到的转录本总数量、比对至NT数据库的转录本数量，以及同时满足以下两项条件的转录本数量：其一，表达量FPKM（每百万比对片段对应每千碱基转录本的片段数）>0或FPKM>10；其二，在其与NT数据库的前五条比对结果中，至少存在一条带有猪或人类注释的比对结果。本数据集文件格式为XLSX，大小为26 KB。