we estimated the non-synonymous/synonymous rate ratio (dN/dS) at each codon site using the Bayesian approach implemented in the CodeML program of the PAML4 package (Yang 2007) .
Understanding the molecular evolution of genes that underlie intraspecific polymorphisms can provide insights into the process of adaptive evolution. For adaptive polymorphisms characterized by gene p
While welcoming the comment of Ho et al. (2015), we find little that undermines the strength of our criticism, and it would appear they have misunderstood our central argument. Here we respond with th