Genes with significantly different transcript levels in <i>T</i>. <i>pallidum</i> from <i>in vitro</i> cultures and infected rabbits.

Average normalized counts, log2-fold difference and false discovery rate (FDR) adjusted p-values were determined using DESeq2. Gene function was based on [9]. Functional categories were based on Gene Ontology (GO) terms (QuickGO). Log2 values represent the ratio of rabbit counts/in vitro counts. Genes are listed in the order of ascending log2-fold Difference. Differences in tRNA expression were excluded from this analysis.