遇见数据集

SNP dataset for 39 Kenyan honey bees (part 2)

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Mendeley Data2024-01-31 更新2024-06-27 收录
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This dataset contains the 8+ million SNPs that were detected between 39 Kenyan honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 39_kenyan_honeybees.vcf.gz input file has been split into four numbered parts (0 to 3). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 39_kenyan_honeybees.vcf.gz.{0..3}.split > 39_kenyan_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 39_kenyan_honeybees.vcf.gz

本数据集包含通过FreeBayes工具对39只肯尼亚蜜蜂样本进行检测后得到的超800万条单核苷酸多态性(Single Nucleotide Polymorphism, SNP),且所有SNP均通过了质量过滤。关于SNP的处理流程、样本标签及质量控制的详细信息已刊载于本论文及其补充材料中。原始输入文件39_kenyan_honeybees.vcf.gz(变异检测格式(Variant Call Format, VCF)压缩文件)已被拆分为4个带编号的分卷(编号0至3)。下载所有分卷后,可通过以下UNIX命令将其合并以还原原始文件:cat 39_kenyan_honeybees.vcf.gz.{0..3}.split > 39_kenyan_honeybees.vcf.gz。随后可通过UNIX命令gunzip 39_kenyan_honeybees.vcf.gz对该VCF文件进行解压缩。

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2024-01-31
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