Supplement 1. Matlab computer code and data for analyses of the full model.

File List Duffy_et_al.m Metschfig.m MetschLLfunct.m simanneal.m UnsmoothedMetschDynamics.txt Description Duffy_et_al.m: main Matlab file; calls Metschfig.m, MetschLLfunct.m, and simanneal.m Together, these files provide the code for analyses of the full model given by Eq. 1. Matlab is produced by MathWorks (2007, MATLAB Version 7, MathWorks, Natick, Massachusetts, USA). UnsmoothedMetschDynamics.txt: data file called by Duffy_et_al.m; this file contains data on lake/epidemic identity (column 1), Julian day (column 2), infection prevalence (column 3), D. dentifera density (column 4), susceptible density (column 5), infected density (column 6), weighted temperature (column 7), and epilimnion temperature (column 8).