Variant Effect Predictor (VEP) output file for chromosome 4B.

NIAID Data Ecosystem2026-05-01 收录

遗传变异效应预测

小麦基因组变异分析

数据链接：

https://figshare.com/articles/dataset/Variant_Effect_Predictor_VEP_output_file_for_chromosome_4B_/24176164 数据链接链接失效反馈

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资源简介：

Variant Effect Predictor (VEP) output file for chromosome 4B.

创建时间：

2023-09-21

DataSheet_3_Increasing genomic prediction accuracy for unphenotyped full-sib families by modeling additive and dominance effects with large datasets in white spruce.pdf

树木基因组选择

遗传变异效应预测

IntroductionGenomic selection is becoming a standard technique in plant breeding and is now being introduced into forest tree breeding. Despite promising results to predict the genetic merit of superi

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Calibration of variant effect predictors on genome-wide data masks heterogeneous performance across genes

遗传变异效应预测

预测器性能校准

Supplemental files contain all necessary datasets to reproduce the analysis and figures in "Calibration of variant effect predictors on genome-wide data masks heterogeneous performance across genes" C

NIAID Data Ecosystem10

Additional file 2 of Variant effect predictor correlation with functional assays is reflective of clinical classification performance

遗传变异效应预测

临床分类性能

Supplementary Material 2. Excel spreadsheet. Contains Tables S1–S8 and full references for all VEPs and DMS datasets in the study

NIAID Data Ecosystem10

Multimodal learning of noncoding variant effects using genome sequence and chromatin structure

遗传变异效应预测

3D基因组学

ncVarPred-1D3D: pretrained models of Sei (PMID: 35817977) + our 3D structure embedding models are shared. The models are trained and validated using DeepSEA (PMID: 26301843) selected 200 bp regions (w

NIAID Data Ecosystem20

CPT-1 whole-proteome variant effect prediction

遗传变异效应预测

蛋白质组学

Cross-protein transfer learning for variant effect prediction This repository contains the variant effect preditions of CPT-1 for 18,602 human proteins, initially released with the m

Zenodo2023-11-21 更新10

Variant Effect Predictor (VEP) output file for chromosome 4B.

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