Additional file 1: of The constitutive differential transcriptome of a brain circuit for vocal learning

Table S1. Summary of the numbers of oligos and cDNAs analyzed for each nucleus. Table S2. Summary of the subsets of differential vs. non-differential genes analyzed for each nucleus to establish the p-value cutoffs in Fig. 2. Table S3. List of genes that are differentially regulated in HVC vs. Shelf. Table S4. List of genes that are differentially regulated in RA vs. VLA. Table S5. List of genes that are differentially regulated in nXIIts vs. SSP. Table S6. List of genes that are differentially regulated in Area X vs. VSP. Table S7. Pathways significantly over-represented in HVC. Table S8. Pathways significantly over-represented in RA. Table S9. Pathways significantly over-represented in nXIIts. Table S10. Pathways significantly over-represented in Area X. Table S11. Level 5 Gene Ontology (GO) terms significantly over-represented in HVC. Table S12. Level 5 Gene Ontology (GO) terms significantly over-represented in RA. Table S13. Level 5 Gene Ontology (GO) terms significantly over-represented in nXIIts. Table S14. Level 5 Gene Ontology (GO) terms significantly over-represented in Area X. Table S15. Unique and shared markers of song system nuclei. Table S16. Summary of in situ and array data analyzed to assess gene regulation in Figs. 4-9. (XLSX 244Â kb)表S1 针对每个神经核团分析的寡核苷酸与互补DNA（cDNA）数量汇总。 表S2 为确定图2中的p值截断阈值而分析的各神经核团差异基因与非差异基因子集汇总。 表S3 HVC与Shelf间存在差异调控的基因列表。 表S4 RA与VLA间存在差异调控的基因列表。 表S5 nXIIts与SSP间存在差异调控的基因列表。 表S6 Area X与VSP间存在差异调控的基因列表。 表S7 HVC中显著富集的信号通路汇总。 表S8 RA中显著富集的信号通路汇总。 表S9 nXIIts中显著富集的信号通路汇总。 表S10 Area X中显著富集的信号通路汇总。 表S11 HVC中显著富集的第五层级基因本体（Gene Ontology，GO）术语。 表S12 RA中显著富集的第五层级基因本体（GO）术语。 表S13 nXIIts中显著富集的第五层级基因本体（GO）术语。 表S14 Area X中显著富集的第五层级基因本体（GO）术语。 表S15 鸣唱系统各神经核团的特异性标记基因与共享标记基因。 表S16 用于评估图4至9中基因调控情况的原位杂交数据与基因芯片数据汇总（XLSX格式，244 KB）。