MOESM3 of MYC deregulates TET1 and TET2 expression to control global DNA (hydroxy)methylation and gene expression to maintain a neoplastic phenotype in T-ALL

Additional file 3. Detailed lists of genes used in DMR, hDMR, DEG, GSEA, and intersection analysis. List of genes associated with DMRs and hDMRs in mouse T-ALL cells (EµSRα-tTAα;tet-o-MYC) (6780) before and upon 2 days of MYC inactivation (+DOX). List of genes associated with DMRs and hDMRs, as well as DEGs and intersection analysis in human T-ALL (CCRF-CEM) upon TET1 KD. List of genes associated with DMRs and hDMRs, as well as DEGs and intersection analysis in human T-ALL (CCRF-CEM) upon ectopic TET2 expression. List of genes from GSEA analysis in human T-ALL (CCRF-CEM) upon TET1 KD. List of genes used in GSEA analysis in human T-ALL (CCRF-CEM) upon ectopic TET2 expression. Gene lists used for intersection analysis of MYC target genes, TET1 DEGs, and TET2 DEGs.