nuclear RNA of the Sericostoma genome assembly
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Nuclear RNA sequences were identified in the draft genome assembly. tRNA genes were identified using tRNAscan-SE with default parameters. miRNA and snRNA were identified using the INFERNAL software by searching against the Rfam database (release 9.1) with default parameters. rRNA genes were identified by BLASTn (cutoff: 10-5) searches against conserved invertebrate rRNA sequences. Separate files are provided for each type of RNA.
在基因组草图组装结果中鉴定出核RNA序列。其中,转运RNA(transfer RNA, tRNA)基因通过tRNAscan-SE软件并采用默认参数完成鉴定;微小RNA(microRNA, miRNA)与小核RNA(small nuclear RNA, snRNA)通过INFERNAL软件,以默认参数比对Rfam数据库(版本9.1)完成鉴定;核糖体RNA(ribosomal RNA, rRNA)基因通过BLASTn工具,以10^-5为比对阈值,检索保守无脊椎动物rRNA序列完成鉴定。所有类型RNA的分析结果均以独立文件形式提供。
创建时间:
2018-02-20



