CNV-loci associated with seven diseases.

Notes: Landmark is the representative SNP site in the associated CNV-loci. Loss, Abnm and Gain denote the three hypotheses in the SNP site-based testing, in which deletion, amplification and both were tested respectively; Window-based is the P values from the window-based testing; Trend and Genotypic indicate the genotype-association P values in the WTCCC paper, and missing P values in both of the tests are labeled with “NA” for Not Available. A detailled list of SNP sites that were associated with diseases could be found in the Table S1. Seven diseases were tested with CNV-association in the present work, which are bipolar disorder (BD), coronary artery disease (CAD), Crohn's disease (CD), hypertension (HT), rheumatoid arthritis (RA), type 1 diabetes (T1D) and type 2 diabetes (T2D).