Linking gene expression and oenological traits: comparison between indigenous Torulaspora delbrueckii and Saccharomyces cerevisiae strains

Supplementary figure 1. Trinity output. PCA clustering of the samples for (A) Saccharomyces cerevisiae (B) Torulaspora delbrueckii. Centered heatmap of differential expressed transcripts for (C) Saccharomyces cerevisiae (D) Torulaspora delbrueckii; T24 (exponential growth phase), T140 (early stationary phase) and T240 (late stationary phase). Supplementary figure 2. Homology analysis. (A) Species similarity with a cut off E-value ≤10-5. (B) Phylogeny tree of the species (C) Venn diagrams of the transcripts KO terms (Vinny 2.1). Supplementary figure 3. KEGG Mapper Reconstruct Pathway. KEGG 01100 - Metabolic pathways populated with transcriptomes KO terms. Shared reaction (blue line), S. cerevisiae unique reaction (red line) and T. delbrueckii unique reactions (green line). Supplementary file 1. S. cerevisiae and T. delbrueckii Trinotate and edgeR outputs. Trinity and BUsco statistscs.补充图1. Trinity软件输出结果。(A)酿酒酵母(Saccharomyces cerevisiae)、(B)戴尔有孢圆酵母(Torulaspora delbrueckii)样本的主成分分析(PCA)聚类结果；(C)酿酒酵母(Saccharomyces cerevisiae)、(D)戴尔有孢圆酵母(Torulaspora delbrueckii)的差异表达转录本中心化热图，样本分组包括T24（指数生长期）、T140（稳定早期）与T240（稳定晚期）。 补充图2. 同源性分析。(A) E值(E-value) cutoff≤10⁻⁵的物种相似性分析；(B) 物种系统发育树；(C) 基于Vinny 2.1软件分析得到的转录本KO注释项韦恩(Venn)图。 补充图3. KEGG Mapper通路重构结果。填充有转录组KO注释项的KEGG 01100号代谢通路：蓝色线条代表共有反应，红色线条代表酿酒酵母(Saccharomyces cerevisiae)特有反应，绿色线条代表戴尔有孢圆酵母(Torulaspora delbrueckii)特有反应。 补充文件1. 酿酒酵母(Saccharomyces cerevisiae)与戴尔有孢圆酵母(Torulaspora delbrueckii)的Trinotate及edgeR分析结果，以及Trinity与BUSCO统计数据。