Additional file 2 of Conversion between duplicated genes generated by polyploidization contributes to the divergence of poplar and willow

Additional file 2: Table S1. Number of homologous blocks and gene pairs within a genome or between genomes. Table S2. Kernel function analysis of Ks distribution related to duplication events within each genome and between selected genomes. Table S3. Identified quartets and gene conversion in P. trichocarpa and S. brachista. Table S4. Gene conversion and quartets in P. trichocarpa and S. brachista. Table S5. Gene conversion and quartets in S. brachista and P. trichocarpa. Table S6. Paralogous gene conversion physical location in P. trichocarpa and S. brachista. Table S7. The correction of conversion and density of duplicates in P. trichocarpa. Table S8. The correction of conversion and density of duplicates in S. brachista. Table S9. Expression level of converted and non-converted gene pairs in P. trichocarpa and S. brachista. Table S10. Comparison of expression differences between converted and non-converted gene pairs. Table S11. Comparison of mean TPM difference between converted and non-converted gene pairs. Table S12. Gene ontology analysis of duplicated genes. Table S13. GO analysis of converted genes and duplicates in P. trichocarpa and S. brachista. Table S14. The possible specific biological traits of converted genes in P. trichocarpa. Table S15. The possible specific biological traits of converted genes in S. brachista. Table S16. The possible biological traits of reported converted genes in P. trichocarpa and S. brachista. Table S17. Information of original data material.附加文件2：表S1 基因组内或基因组间同源区段与基因对数量。表S2 各基因组内部及选定基因组间与复制事件相关的Ks分布核函数分析。表S3 毛果杨（P. trichocarpa）与短柱柳（S. brachista）中已鉴定的四重基因单元与基因转换事件。表S4 毛果杨与短柱柳中的基因转换与四重基因单元。表S5 短柱柳与毛果杨中的基因转换与四重基因单元。表S6 毛果杨与短柱柳中旁系同源基因转换的物理位置信息。表S7 毛果杨的基因转换校正与重复基因密度情况。表S8 短柱柳的基因转换校正与重复基因密度情况。表S9 毛果杨与短柱柳中已发生基因转换与未发生基因转换的基因对表达水平。表S10 已发生与未发生基因转换的基因对间表达差异对比。表S11 已发生与未发生基因转换的基因对平均TPM（Transcripts Per Million）差异对比。表S12 重复基因的基因本体（Gene Ontology, GO）分析。表S13 毛果杨与短柱柳中发生基因转换的基因及重复基因的GO分析。表S14 毛果杨中发生基因转换的基因的潜在特异性生物学性状。表S15 短柱柳中发生基因转换的基因的潜在特异性生物学性状。表S16 毛果杨与短柱柳中已报道的发生基因转换的基因的潜在生物学性状。表S17 原始数据材料信息。