Risky genetic rescue of the Helmeted Honeyeater

This is data for the manuscript published in Biological Conservation (2023): Benefits of genetic rescue of a critically endangered subspecies from another subspecies outweigh risks: results of captive breeding trials by Alexandra Pavlova, Sara Petrovic, Katherine A. Harrisson, Karina Cartwright, Elizabeth Dobson, Laura L. Hurley, Meagan Lane, Michael JL Magrath, Kimberly Miller, Bruce Quin, Monique Winterhoff, Jian D. L. Yen, and Paul Sunnucks The content of the files is as follows: risky_genetic_rescue_140223.R -- R script for running fitness models and plotting the results. All code is also available at https://doi.org/10.5281/zenodo.7735233 TableS1_parents.xlsx -- Unique birds used in the breeding program (N=74), their sex, taxon, captive or wild origin, date of birth, and types of breeding pairs: unique pairs include each unique pair the bird was involved in once, non-unique pairs include multiple counts for pairs with the same partner in multiple breeding seasons. TableS2_pairs_seasons_aviaries.xlsx -- Unique pairs (N=176), their pair type, sex-specific pair type and aviary size (L-large, M- medium) for each breeding season. TableS3_first_time_pairs.csv -- First-time-pairs dataset: nest building outcomes for first time pairs. TableS4_nests.csv -- Nest dataset: reproductive outcomes per nest. Tables S5-S7 are values plotted on Fig1, Fig2, Appendix 4 and Appendix 5. Column "name" indicates which models the estimate is for: nestbuilt- M1, clutchsize-M2a, eggsfertile- M2b, hatchedeggs- M2c, chicksfledged- M2d, independentchicks- M2e, expected_independent_chicks_reduced_stages- cumulative probabilities. TableS5_Fig1_Fig2_raw_values.csv -- Summary of Bayesian posterior probability values for all Bayesial models and cumulative probabilities used to build Fig.1 and Fig.2 of the main manuscript. TableS6_Appdx4_raw_values_link_scale.csv -- Summary of Bayesian posterior probability values for all Bayesial models used to build plots in Appendix 4. All values are presented relative to CC, for which the value is zero. TableS7_Appdx5_random_effect_raw_values.csv -- Deviations of an individual or group from the fitted value based on all other terms in the model, plotted in Appendix 5. These values should not be interpreted directly, as the modeled value reflects only realized outcomes (for example, the value for a specific DAM_ID shows how this individual's outcome deviates from the expected outcome given its cross type, breeding season, Sire_ID etc). Supplementary_Data1_PairSummary.xlsx -- Pair-per-season dataset: summary of reproductive output for each pair, per breeding season (pairs bred in multiple seasons are listed multiple times). We acknowledge Wurundjeri Woi Wurrung and Gunaikurnai People as Traditional Owners of the lands on which helmeted honeyeaters and Gippsland yellow-tufted honeyeaters occur.本数据集对应发表于《生物保护（Biological Conservation）》2023年卷的研究论文：《不同亚种间的遗传拯救（genetic rescue）对极度濒危亚种的益处大于风险：圈养繁殖试验（captive breeding trials）结果》，作者为Alexandra Pavlova、Sara Petrovic、Katherine A. Harrisson、Karina Cartwright、Elizabeth Dobson、Laura L. Hurley、Meagan Lane、Michael JL Magrath、Kimberly Miller、Bruce Quin、Monique Winterhoff、Jian D. L. Yen及Paul Sunnucks。 本数据集包含的文件内容如下： 1. risky_genetic_rescue_140223.R：用于运行适合度模型（fitness models）与绘图的R脚本，全部代码亦可通过https://doi.org/10.5281/zenodo.7735233获取。 2. TableS1_parents.xlsx：收录繁殖计划中使用的74只独特个体鸟类的相关信息，包括其性别、类群、圈养/野生来源、出生日期，以及繁殖配对类型：唯一配对指该鸟类曾参与一次的独特配对，非唯一配对指在多个繁殖季与同一伴侣配对的重复计数配对。 3. TableS2_pairs_seasons_aviaries.xlsx：收录176个独特繁殖配对的相关信息，包括每个繁殖季的配对类型、性别特异性配对类型以及笼舍尺寸（L代表大型，M代表中型）。 4. TableS3_first_time_pairs.csv：首次配对数据集，收录首次配对个体的筑巢结果。 5. TableS4_nests.csv：鸟巢数据集，收录每巢的繁殖结果。 6. 附表S5至S7分别为主论文图1、图2、附录4及附录5的绘图数值来源。其中列"name"用于标注估计值对应的模型：nestbuilt对应M1模型，clutchsize对应M2a模型，eggsfertile对应M2b模型，hatchedeggs对应M2c模型，chicksfledged对应M2d模型，independentchicks对应M2e模型，expected_independent_chicks_reduced_stages对应累积概率。 7. TableS5_Fig1_Fig2_raw_values.csv：用于构建主论文图1与图2的所有贝叶斯（Bayesian）模型后验概率值及累积概率原始数值汇总表。 8. TableS6_Appdx4_raw_values_link_scale.csv：用于构建附录4绘图的所有贝叶斯模型后验概率原始数值（链接尺度）汇总表。所有数值均以CC为参照基准，其对应值为0。 9. TableS7_Appdx5_random_effect_raw_values.csv：基于模型中所有其他项计算得到的个体或群体与拟合值的偏差值，用于附录5绘图。此类数值不可直接解读，因模型值仅反映实际观测结果（例如，特定DAM_ID的数值表示该个体的繁殖结果相较于其杂交类型、繁殖季、父本ID等条件下的预期结果的偏差）。 10. Supplementary_Data1_PairSummary.xlsx：逐季配对数据集，汇总每个繁殖季各配对的繁殖产出（在多个繁殖季参与繁殖的配对将被多次列出）。 11. 本数据集致谢沃伦杰里·沃伊·沃朗（Wurundjeri Woi Wurrung）与古奈库奈（Gunaikurnai）族群，其为盔吸蜜鸟（helmeted honeyeaters）及吉普斯兰黄吸蜜鸟（Gippsland yellow-tufted honeyeaters）栖息地的传统土地所有者。