SpatialZ:Bridging the dimensional gap from planar spatial transcriptomics to 3d cell atlases-processed datasets

All datasets analyzed for this study are publicly available. The 3D visual cortex dataset, generated using STARmap technology, is available through STARmap Resources at https://www.starmapresources.org/data. The mouse hypothalamus MERFISH dataset can be obtained from DRYAD at https://datadryad.org/stash/dataset/doi:10.5061/dryad.8t8s248. This dataset includes five annotated sections as detailed in the publication available at https://doi.org/10.1186/s13059-022-02734-7. The large-scale MERFISH atlases are available on the CELLxGENE database at https://cellxgene.cziscience.com/collections/0cca8620-8dee-45d0-aef5-23f032a5cf09. The human breast cancer imaging mass cytometry (IMC) data is available at https://doi.org/10.5281/zenodo.4752030.