Datanator

Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.

Datanator乃一项集成的基因组与生化数据数据库，旨在协助研究人员寻找特定生物体及特定环境下特定分子与反应的相关数据，以支持元分析和机制模型的构建。Datanator目前整合了来自多个数据库及众多出版物中的代谢物浓度、RNA修饰及半衰期、蛋白质丰度及修饰，以及反应动力学等数据。Datanator网站及REST API提供了提取特定生物体及特定环境下特定分子与反应的数据云工具，以及关于同属生物中相似分子与反应的数据。

搜集汇总

背景与挑战

背景概述

Datanator是一个生命科学领域的集成数据库，专注于基因组和生化数据，旨在支持元分析和机制模型研究。它整合了多个来源的数据，包括代谢物浓度、RNA修饰、蛋白质丰度等，并提供REST API工具，便于数据提取和访问。数据库由非营利机构维护，采用开放访问策略和CC许可，但数据上传受限，并具备版本控制和质量管理功能。