Palmer_KIR3DL3_WTA_TCR.R provides the code for Seurat clustering, multi-modal mapping, and differential expression analysis, alongside the analysis of TCR data, GSEA analysis, and VISION analysis. All
The ratio of tetramer-positive (Tet+) to tetramer-negative (Tet−) CD4+ T cells is given for each of the 24 Vβ specificities tested. Only ratio ≥4 in populations of Tet+ cells ≥2% are reported.
Single-cell RNA-seq from CD4+ T lymphocytes from uninfected steady-state mouse, two mice with Salmonella typhimurium infection at day 14 and one mouse at day 49 post-infection. Used to demonstrate app
