Semi-Synthetic E. coli abundance estimation benchmark
收藏Zenodo2025-05-01 更新2026-05-26 收录
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https://zenodo.org/doi/10.5281/zenodo.14593703
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资源简介：
This is the semi-synthetic benchmark used in the ChronoStrain paper, due for publication in Nature Microbiology 2025.
reads.tar.zst (compressed using zst) - the read dataset, meaning synthetic reads + background reads. Note: this large file (12G) was split into 500M chunks using the linux "split" utility. To re-join them, use the command "cat reads.tar.zst.part* > reads.tar.zst"]
phylogroups.txt - the phylogroup annotation of the reference E.coli genomes.
*.tar.gz - database files for each respective method. The only database archive missing is the large 640k pan-genome themisto v3 index, which is compiled by different authors. Go here to obtain that index: https://zenodo.org/records/7736981
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Zenodo创建时间：
2025-02-28
