CUF101-selmap

Data files for reproducing selection mapping results:<br>----------------------------<br><br>"SNPs_counts-R.txt" - Raw count file (84978 x 576) - 84978 markers - 288 individuals, 2 alleles per individual<br>Format:<br>marker1 ind.1a1count ind.1a2count.....ind.na1count ind.na2count <br>----------------------------<br>- Cluster sequences in fasta format- MockReference sequence in fasta format- both produced using modified GBS-SNP-CROP<br>----------------------------<br><br>"SNPsCADL.bwa.sam"<br>"SNPsMt.bwa.sam"<br>- SAM format (without header) alignment information from aligning clusters to Mt v4.0 and CADL<br><br>----------------------------<br><br>"SNP_clustermap.desc.txt"<br>- Cluster information (i.e. which cluster a marker originates from and coordinates) for every marker<br><br>