Annotation terms, total number of sequences used to construct the classified model proteins, and of the classified model proteins (for site 1 only; entries are ordered by decreasing ).
The threshold represents the allowed separation distance in number of residues along the primary sequence between predicted and reported residues. The predicted residues are for all three states and
All values are given as percentages. Consensus structures were generated by RNAalifold [21] using SHAPE-directed sequence alignments (column pair 4). These structures were then used to constrain indiv
