Fine-scale phylogeography of coastal fishes in the South China Sea: Possible roles of biological traits and geography

This dataset contains input files for a suite of phylogeographic analyses conducted on several coastal fishes in the South China Sea, results of which described in the paper \"Fine-scale phylogeography of coastal fishes in the South China Sea: Possible roles of biological traits and geography\", submitted to Journal of Biogeography. Outline of each analysis is as follows: arlequin: Estimations of genetic diversity indices and genetic differentiation using Arlequin. BSP: Reconstruction of historical demography using a Bayesian skyline plot implemented in BEAST. MSN: Construction of minimum spanning networks using PopART. BMS: Testing association between genetic diversity indices and biological traits by Bayesian Model Averaging using the R package 'bms'. PCF: Testing association between phylogeographic patterns and bilogical traits using Phylogeographic Concordance Factors. See readme.txt in the folder for each analysis for more detail. Â