Retrained basecall model

Figshare2024-05-20 更新2026-04-28 收录

纳米孔测序基础识别

微生物基因组分析

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This model was retrained with four negative control datasets (methylation-free) including A. pittii, E. coli, E. faecium, and K. pneumoniae.

创建时间：

2024-05-20

Table_2_Whole Genome Sequencing of Australian Candida glabrata Isolates Reveals Genetic Diversity and Novel Sequence Types.XLSX

微生物基因组分析

抗真菌耐药性

Candida glabrata is a pathogen with reduced susceptibility to azoles and echinocandins. Analysis by traditional multilocus sequence typing (MLST) has recognized an increasing number of sequence types

NIAID Data Ecosystem60

MIDAS2 protocol example custom genome collection dataset v1

微生物基因组分析

参考基因组构建

Example input database of custom genome collection for MIDAS2 protocols. Two genomes from two species (Staphylococcus epidermidis and Streptococcus mutans )

NIAID Data Ecosystem30

Octadecabacter arcticus 238

tRNA注释

微生物基因组分析

tRNAs decoding standard 20 AA 43 Selenocysteine tRNAs (TCA) 0 Possible suppressor tRNAs (CTA,TTA,TCA) 0 tRNAs with undetermined or unknown isotypes 0 Predicted pseudogenes 6 Total tRNAs 49

Genomic tRNA Database20

Putative prophages of the complete genome CFSAN029793 identified by a combination of PHAST [32], PHASTER [33] and prophage insertion site examination.

原噬菌体

微生物基因组分析

Putative prophages of the complete genome CFSAN029793 identified by a combination of PHAST [32], PHASTER [33] and prophage insertion site examination.

NIAID Data Ecosystem40

Premature infant gut Metagenome. Veillonella sp. DORA_A_3_16_22

早产儿肠道微生物群

微生物基因组分析

To study the stability and function of early microbial colonizers of the premature infant gut, nine stool samples were taken during the third week of life of a premature male infant delivered via Caes

NIAID Data Ecosystem30

Retrained basecall model

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