data_packet

This is a compressed zip folder that contains the input files and alignments for molecular phylogenetic analyses performed for the study. These include:1) alignment of nrITS (NEXUS); 2) alignment of nrITS used for distance metrics (NEXUS); 3, alignments of mtSSU used in maximum likelihood (ML; PHYLIP) and Bayesian inference (BI; NEXUS); and 4) alignments of mtSSU+nrITS (standard in NEXUSA format with excluded regions) used in partitioned ML (PHYLIP, together with partition input file for RAxML) and partitioned BI (NEXUS).

本压缩ZIP文件夹包含本研究中分子系统发育分析所用的输入文件与序列联配（alignment）文件，具体包含以下内容：1. 核核糖体内部转录间隔区（nuclear ribosomal internal transcribed spacer, nrITS）序列联配文件（格式为NEXUS）；2. 用于距离度量的nrITS序列联配文件（格式为NEXUS）；3. 用于最大似然法（maximum likelihood, ML）与贝叶斯推断（Bayesian inference, BI）分析的线粒体小亚基核糖体RNA（mitochondrial small subunit ribosomal RNA, mtSSU）序列联配文件：其中最大似然法分析所用文件格式为PHYLIP，贝叶斯推断所用文件格式为NEXUS；4. 用于分区最大似然法与分区贝叶斯推断分析的mtSSU+nrITS序列联配文件（采用带排除区域的标准NEXUSA格式）：分区最大似然法分析所用文件格式为PHYLIP，同时附带RAxML所需的分区输入文件；分区贝叶斯推断所用文件格式为NEXUS。