Whole genome sequencing has revolutionized infectious disease surveillance for tracking and monitoring the spread and evolution of pathogens. However, using a linear reference genome for genomic analy
Whole genome sequencing of cultured Salmonella enterica as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.
Additional file 1. The variant call was performed by kSNP3. Dataset used here was defined in the method section. Strain SGAir0282 was used as reference genome.
