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SNP and CNV discovery in Bos taurus
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2021-11-12
相关数据集
Bos indicus Raw sequence reads
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Raw variant calls for Durian. Variant calling was based on the reads aligned to the 2017 first durian reference genome. Filtered variant calls for Durian. Variant calling was based on the reads align
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Graph genomes from Talenti et al.: A cattle graph genome incorporating global breed diversity pt.2
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Patterns used to identify allelic singletons and allelic doubletons in the X-QTL data, and the number of loci detected with these patterns.
Patterns used to identify allelic singletons and allelic doubletons in the X-QTL data, and the number of loci detected with these patterns.
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GHGA_sarek3_variant_calling_Agilent200M_WES
Using the sarek pipeline default values. Aligned to HG38 using bwa, and dragmap. Variants are called using either haplotypecaller, strelka, deepvariant, or freebayes. Data input was Agilent 200M WES r
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