Pathogenic mechanisms underlying severe SARS-CoV2 infection remain largely unelucidated. High-throughput sequencing technologies that capture genome and transcriptome information are key approaches to
De novo transcriptome assembly of Aegilops tauschii accession TQ27 based on leaf RNAseq data (SRA SRR5096888; SRR5096893). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomat
Additional file 2. Table S2: Comparison of bacterial pathogen detection performed by Kraken2 implemented in PhytoPipe using raw reads against SILVA rRNA database and rRNA removed reads against NCBI nt