TABLE 4 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures

Name: TABLE 4 in Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures
Creator: Department of Environmental Sciences, Emory University, Atlanta, Georgia, USA; Department of Biology, Columbus State University, Columbus, Georgia, USA; Department of Biology, Chapman University, Orange, California, USA; Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA
Published: 2021-11-04T00:00:00+08:00

Zenodo2021-11-04 更新2026-04-07 收录

花粉物种鉴定

环境基因组学

数据链接：

https://zenodo.org/doi/10.5281/zenodo.15856126 数据链接链接失效反馈

官方服务：

资源简介：

TABLE 4 Number of sequencing reads and Kraken2 k-mer fragments retained for analysis WGS sequencing data of pollen samples through processing steps of quality filtering and classification SampleTotal readsRetained after filteringClassified FragmentsUnclassified FragmentsLevel of classification Genus SpeciesMixture 12,737,8062,418,106706,013 (58.39%)503,040 (41.61%)680,193 (56.30%)669,890 (55.45%)Mixture 22,589,9702,163,054679,753 (62.85%)401,774 (37.15%)660,046 (61.04%)653,062 (60.38%)Mixture 31,832,2341,715,760639,808 (74.58%)218,072 (25.42%)624,267 (72.76%)603,821 (70.38%)Mixture 41,877,3601,795,644682,921 (76.06%)214,901 (23.94%)665,730 (74.19%)635,180 (70.77%)Mixture 51,583,9261,498,748744,876 (99.40%)4,498 (0.60%)731,490 (97.55%)563,733 (75.17%)Mixture 61,524,1281,381,686525,819 (76.11%)165,024 (23.89%)516,610 (74.78%)513,957 (74.38%)Mixture 71,841,2021,777,146581,375 (65.43%)307,198 (34.57%)560,525 (63.05%)550,258 (61.89%)Mixture 81,499,6921,421,518543,432 (76.46%)167,327 (23.54%)533,301 (75.04%)530,254 (74.61%)Mixture 91,294,5221,227,674458,933 (74.76%)154,904 (25.24%)450,772 (73.42%)448,198 (73.01%)Mixture 101,355,2421,208,520447,215 (74.01%)157,045 (25.99%)439,119 (72.64%)436,536 (72.21%)Mixture 112,018,3161,828,026673,577 (73.69%)240,436 (26.31%)661,246 (72.33%)657,267 (71.89%)Ambrosia artemisiifolia1,924,1761,877,500656,579 (69.94%)282,171 (30.06%)630,876 (67.23%)621,140 (66.16%)Artemisia tridentata1,770,4241,722,090554,707 (64.42%)306,338 (35.58%)534,603 (62.09%)524,307 (60.90%)Bassia scoparia1,790,2561,735,430839,951 (96.80%)27,764 (3.20%)832,989 (96.00%)831,720 (95.84%)Broussonetia papyrifera30145 (71.43%)2 (28.57%)5 (71.43%)5 (71.43%)Carya illinoinensis3,049,0022,687,2141,279,514 (95.23%)64,093 (4.77%)1253842 (93.29%)1,250,232 (92.97%)Poa pratensis1,817,9841,736,554640,084 (73.72%)228,193 (26.28%)628302 (72.35%)624,364 (71.89%)Populus deltoides1,613,0621,565,038773,325 (98.83%)9,194 (1.17%)758913 (96.94%)556,430 (71.07%)Populus tremuloides1,664,1881,613,334804,651 (99.75%)2,016 (0.25%)791915 (98.11%)624,746 (77.39%)Zea mays1,610,9261,438,576700,507 (97.39%)18,781 (2.61%)689128 (95.76%)688,837 (95.68%)Negative control 113,24210,096152 (45.65%)181 (54.35%)141 (42.34%)128 (38.43%)

提供机构：

Department of Environmental Sciences, Emory University, Atlanta, Georgia, USA; Department of Biology, Columbus State University, Columbus, Georgia, USA; Department of Biology, Chapman University, Orange, California, USA; Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA

创建时间：

2021-11-04