Three-Dimensional Folding Dynamics of the Xenopus tropicalis genome

NIAID Data Ecosystem2026-03-12 收录

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https://figshare.com/articles/dataset/Three-Dimensional_Folding_Dynamics_of_the_Xenopus_tropicalis_genome/14385002 数据链接链接失效反馈

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资源简介：

Domain calling results of Hi-C experiements for Xenopus tropicalis.

创建时间：

2021-04-08

Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation [4C-seq]. Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation [4C-seq]

表观遗传调控

染色质构象

Polycomb-group proteins play critical roles in gene silencing through the deposition of histone H3 lysine 27 trimethylation (H3K27me3) and chromatin compaction. This process is essential for embryonic

NIAID Data Ecosystem50

Additional file 18 of Loop Catalog: a comprehensive HiChIP database of human and mouse samples

染色质构象

HiChIP数据标准化

Additional file 18: Table S17. Non-Convergence of KR, SCALE, VC, and VC_SQRT Contact Matrix Normalization Methods for 45 Samples.

Figshare2025-06-20 更新40

To profile the chromatin structural changes reprogrammed by the liquid-liquid phase separation of DAXX [HiChIP]

染色质构象

蛋白质相分离功能验证

DAXX is an epigenetic regulator and chromatin chaperon protein. This experiment aims to investigate whether DAXX's phase separation causes changes in chromatin structures. Overall design: DAXX was fu

NIAID Data Ecosystem20

Additional file 6 of TAD-like single-cell domain structures exist on both active and inactive X chromosomes and persist under epigenetic perturbations

染色质构象

表观遗传实验工具

Additional file 6: Supplementary Table 5. Sequences of limited-cycle PCR primers, dye-labeled reverse transcription primers and dye-labeled secondary probes.

Figshare2021-11-08 更新50

Linker histone H1 is required for proper genome folding and coupling DNA methylation with gene expression

染色质构象

DNA甲基化与基因表达调控

We engineered a H1 knockout mutant in Arabidopsis thaliana which shows pleiotropic phenotypes. Using High-throughput Chromosome Conformation Capture (Hi-C), we found that H1 depletion dampens inter- a

NIAID Data Ecosystem40

Three-Dimensional Folding Dynamics of the Xenopus tropicalis genome

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