Simulated single-cell and spatial transcriptomics datasets generated by scDesign3
收藏NIAID Data Ecosystem2026-05-02 收录
数据链接：
官方服务：
资源简介：
The 100 simulated datasets generated by scDesign3 in our benchmarking study.
应用场景：
创建时间：
2025-01-12
相关数据集
Homo sapiens Transcriptome or Gene expression. Homo sapiens
The Association of Biomolecular Resource Facilities (ABRF) study uses combinations of Reference RNAs to compare the performance of different sequencing platforms, including sequence quality, gene expr
NIAID Data Ecosystem50
Additional file 2 of Disparities in spatially variable gene calling highlight the need for benchmarking spatial transcriptomics methods
Additional file 2: Table S1. Reported statistic and associated p-value from each combination of pairwise comparison of results between SpatialDE, SPARK-X, scGCO and Squidpy when reported p-values were
Figshare2023-11-19 更新50
synthetic metagenome Raw sequence reads. synthetic metagenome
A set of complex, realistic data sets were simulated based on real Illumina HiSeq 2500 data (150 bp PE reads). Two "Groups (A,B)" consisting of 50 samples each were used to benchmark metatranscriptomi
NIAID Data Ecosystem30
RNA splicing analysis using heterogeneous and large RNA-seq datasets
The ubiquity of RNA-seq has led to many methods that use RNA-seq data to analyze variations in RNA splicing. However, available methods are not well suited for handling heterogeneous and large dataset
NIAID Data Ecosystem50
Example dataset to run end-to-end pipeline (Xenium benchmarking)
This repository contains an. This example dataset is a reduced form of the one shared by Kukanja, Langseth et al. 2024. (https://doi.org/10.1016/j.cell.2024.02.030) and represents a human section of s
NIAID Data Ecosystem40
