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Molecular dynamics simulations of the binding stability of selected terpenes towards NS5B RNA polymerase from hepatitis C virus

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Figshare2023-06-19 更新2026-04-08 收录
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xxx.zip contains PDB files of every complex throughout the molecular dynamics simulations, taken at 2.5 ns intervals (simulation time). Filenames follow the format xxxx_nnn.pdb , where xxx is the ligand name and nnn is equal to simulation_time (in ns) divided by 0.25. <br> RMSD.zip contains the tables with the RMSD values of protein and ligand upon comparing each complex snapshot with: A) its initial structure (xxx_RMSD_vs_0.tab) B) its structure after 25 ns simulation time (xxx_RMSD_vs_100.tab) C) its structure after 75 ns simulation time (xxx_RMSD_vs_300.tab) D) its structure after 150 ns simulation time (xxx_RMSD_vs_600.tab) <br> <br>

提供机构:
Silva, Pedro
创建时间:
2023-05-29
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