Data set for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

Name: Data set for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"
Creator: Zenodo
Published: 2021-08-02T17:06:54+08:00

Zenodo2021-08-02 更新2026-05-25 收录

DNA结合蛋白预测

蛋白质功能

数据链接：

https://zenodo.org/record/5137962 数据链接链接失效反馈

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资源简介：

Data set and results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins" The file "dna_binding_protein_sequences.zip" has the testing and training sets from the paper: RLL - "random_<train/test>_full_1000.csv" RSL - "random_<train/test>_50.csv" RS&LL - "random_<train/test>_50_1000.csv" RLL where included positive examples have verified DNA binding activity - "random_<train/test>_hq_1000.csv" The results files are named similarly. The species data sets are derived from "uniprot_data_bac.tab" and "uniprot_data_not_bac.tab." See code. The ESM embeddings used by the XGBoost model are in "dna_binding_protein_esm.zip"

提供机构：

Zenodo

创建时间：

2021-08-02

Data set for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

资源简介：

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