Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies

All assembled transcriptomes, alignments, inferred gene and species trees, fossil calibrated phylogenies, paleontological record, PhyloNet results, QS results and introgression results. alignments: Different MSAs in fasta format with corresponding locus partition filesintrogression_results: Compiled output results from Hyde (with taxa map),Dfoil and QuIBL mcmctree_trees_correct: Labeled ML tree (Odonata.tre) for divergence time estimation with the results from 5 independent MCMCtree runs. The mcmc.txt files can be used in Tracer to verify convergence. odonatoptera_fossil_record: Fossil record from PaleoDB phylonet_results: Inferred phylogenetic networks and tested reticulation events qs_results: quartet sampling results trees: All estimated species treestrinity_transcriptomes: All assembled Trinity transcriptomes