No 1. DADA2 Workflow (16S rRNA) Output

Output files from the No 1. DADA2 Workflow page of the Bocas Hypoxia study. <br>File names and descriptions:<br><b>RUN01_read_changes.txt</b>: Tracking changes in read counts (per sample) from the beginning to end of the DADA2 workflow.<br><b>RUN02_read_changes.txt</b>: Tracking changes in read counts (per sample) from the beginning to end of the DADA2 workflow.<br><b>combo_pipeline.rdata: </b>contains sequence and taxonomy tables from the DADA2 pipeline needed for subsequent analyses. To see the <b>Objects</b>, in R run <i>load("combo_pipeline.rdata", verbose=TRUE)<br></i><br>1) seqtab.1: Sequence table from Run01 before merging with Run02.2) seqtab.1: Sequence table from Run02 before merging with Run01.3) st.sum: merged sequence table before removing chimeras4) st.all: duplicate of st.sum5) seqtab: merged sequence table after removing chimeras6) tax_silva: Silva (v132) taxonomy table of seqtab7) tax_gg: GreenGenes taxonomy table of seqtab<br>