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资源简介：
ITS table with features removed identified via DECONTAM
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创建时间：
2022-10-09
相关数据集
Negative control analysis
mothur output files and R code for analysis of negative controls (not subsampled, includes digester and liquid effluent samples, does not include mock community) LW56 = negative kit controlLW57 = no-t
NIAID Data Ecosystem60
Intermediate data on microbiome mix-ups and mixtures
These are intermediate data files for the paper Lobo AK, Traeger LL, Keller MP, Attie AD, Rey FE, Broman KW (2019) Identification of sample mix-ups and mixtures in microbiome data in Diversity Outbre
NIAID Data Ecosystem40
Sample tracking in microbiome diagnostic assays using synthetic DNA spike-in controls Raw sequence reads
In this study, we have employed synthetic 16S rRNA gene (16S) sequences previously developed by our group to establish a quality control method that enables post hoc identification of swapped and cros
NIAID Data Ecosystem30
Median number of spurious OTUs and genera identified in mock community sequence collections after removing chimeras identified using Uchime and removing all true chimeras within the two pipelines.
Median number of spurious OTUs and genera identified in mock community sequence collections after removing chimeras identified using Uchime and removing all true chimeras within the two pipelines.
Figshare2015-12-02 更新40
Supplementary Methods
Supplementary Table 1 The amount and percentage of contaminant sequences in the negative control that passed through quality filtering and clustered into operational taxonomic units (OTUs).
DataCite Commons2024-05-16 更新40
