Acanthaster whole genome datasets

These whole-genome datasets were analyzed to assess the connectivity patterns of Crown-of-Thorns Seastars (COTS, Acanthaster cf. solaris) across the Pacific Ocean. Find below the description of each dataset: Aca_206_ind_allSNPs_chr1_renamed.vcf.gz: contains genotype calls from all SNPs of the longest scaffold, for all 206 Acanthaster cf. solaris samples. It was produced by ANGSD and filtered in bcftools, and was used to detect contaminated samples in the dataset with verifyBamID. Aca_198_ind_thin10kSNPs.beagle.gz: contains genotype likelihoods from 198 non-contaminated Acanthaster cf. solaris samples. It was produced by ANGSD, thinned with vcftools, and transformed to genotype likelihoods again by ANGSD. It was used to assess population connectivity, structure and diversity. Aca_198_ind_think10kSNPs.recode.vcf: contains genotype calls from 198 non-contaminated Acanthaster cf. solaris samples. It was produced by ANGSD and thinned with vcftools. It was used for population structure analyses. T_mod_ANGSD_Haplo_09filt.fasta: fasta file with haplotype calls from 198 non-contaminated Acanthaster cf. solaris samples, plus 2 COTS samples from the Gulf of California, plus 2 Acanthaster planci samples from the Indian Ocean, plus 2 Acanthaster benziei from the Red Sea. It was produced by ANGSD using the -doHaploCall 2 flag, and then transformed to fasta using a custom R script (see https://github.com/cleivama/COTS-WGS-popgen/).