<b>Dataset of 569 metagenome-assembled genomes from the caeca of multiple chicken breeds from commercial and backyard farming setups of Pakistan</b>

This article presents metagenomic-assembled genomes (MAGs) of prokaryotic organisms recovered from 9 different groups of chicken raised in different farm setups in Pakistan. The groups comprise three different breeds (Broilers, White Layers, Black Australorp) of chicken raised in different farming setups that include antibiotic-free control sheds, commercial, and backyard farms. The binning of the samples identified 569 MAGs with50% completion, and10% contamination. The data for each MAG includes sequences in FASTA format, tables of functional annotation of genes, along with two different strategies for recovery of phylogenetic tree for these MAGs. Major geochemical cycles at community level including carbon, sulfur, and nitrogen cycles are also recovered.

本文报道了从巴基斯坦不同养殖模式下饲养的9组鸡中分离得到的原核生物宏基因组组装基因组（metagenomic-assembled genomes, MAGs）。该9组鸡涵盖3个不同品种（肉鸡（Broilers）、白羽蛋鸡（White Layers）、澳洲黑鸡（Black Australorp）），饲养于无抗生素对照鸡舍、商业养殖场及家庭后院农场等多种养殖模式中。对样本进行宏基因组分箱分析后，共鉴定得到569个完整度为50%、污染度为10%的宏基因组组装基因组。每个宏基因组组装基因组的数据包含FASTA格式的序列文件、基因功能注释表格，以及两种用于构建该类基因组系统发育树的策略。本研究同时获取了群落水平的主要生物地球化学循环数据，涵盖碳循环、硫循环与氮循环。

搜集汇总

背景与挑战

背景概述

该数据集包含从巴基斯坦不同养殖环境（商业和家庭后院养殖）的多个鸡品种盲肠中恢复的569个宏基因组组装基因组（MAGs），每个MAG均满足≥50%完整性和≤10%污染的标准。数据集提供了FASTA格式序列、基因功能注释表以及系统发育树重建策略，并涵盖了碳、硫、氮等地球化学循环的群落水平分析。