Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes - Supplementary Tables S1-S5

Supplementary Table S1: Matrix of genotypes defined within each of the genes Supplementary Table S2: Lineages in gene trees under significant positive selection. The table is a summary of branches across all HCMV gene trees that evolved under significant (corrected p-value Supplementary Table S3: Summary of positive selection, LD and diversity scans Supplementary Table S4: List of genes with the strongest hotspots of nucleotidic diversity (hyper-variable genes). Supplementary Table S5: Summary statistics of local LD detection in simulated genomes.