Key: Heterozygous, Het; Homozygous, Homo; Familial, FM; Sporadic, SP; Not available, n.a. * Frequency: No. of control carriers/ total No. of controls. Novel sequence variants detected in this study.
Using the sarek pipeline default values. Aligned to HG38 using bwa, and dragmap. Variants are called using either haplotypecaller, strelka, deepvariant, or freebayes. Data input was Agilent 200M WES r
Mapping depth of coverage of the pseudo-chromosome reference and SNP numbers that were identified for the purebred parental lines Avalon and Cadenza plus the bulks.
daSNVs in ACMG genes where inadequate coverage was observed among at least one platform, using WES/ACE data normalized to both 12 Gb and 100Ă mean coverage. (XLSX 312Â kb)