Analytical Model for Pre-Alignment Filtering in Memory

Analytical Model for Pre-Alignment Filtering in Memory used for the evaluation of the paper titled RattlesnakeJake: A Fast and Accurate Pre-Alignment Filter Suitable for Computation-in-Memory and the M.Sc. thesis of Michael Miao at QCE department. This analytical model is used to calculate the resource requirements (tile sizes, etc.) for the architectures in the research presented in the paper and the thesis given a genomic dataset.