Additional file 3: of Expression profiling of in vivo ductal carcinoma in situ progression models identified B cell lymphoma-9 as a molecular driver of breast cancer invasion

Differentially expressed genes in DCIS.COM and SUM225 mouse intraductal xenograft model (MIND) xenografts during transition from 2 to 6 weeks. Significance analysis for microarrays (SAM) software was utilized to determine differentially expressed genes between the 2- to 6-week time point in both DCIS.COM and SUM225 cell lines. The cutoff for significance was determined by <5 % false discovery rate. Two-class unpaired SAM analysis generated a list of significant genes and fold-change values between 2 and 6 weeks in DCIS.COM (18,590 downregulated; 10,227 upregulated) and SUM225 (19,953 downregulated and 14,691 upregulated). (XLSX 3297 kb)