Xenium ILC / IDC pathologist annotation breast cancer

Annotation of spatial transcriptomic breast cancer samples. Originally created for https://genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03241-7 Hosted here for convenient use in the Spacehack project https://github.com/SpatialHackathon/SpaceHack2023 Data was accessed from the SubcellularSpatialData R package. Subset to unique cell ids and region annotation. Rows with missing values were removed. Xenium data: https://www.10xgenomics.com/datasets/xenium-ffpe-human-breast-with-custom-add-on-panel-1-standard All credit to the original authors: Dharmesh D. Bhuva,Chin Wee Tan,Agus Salim,Claire Marceaux,Marie A. Pickering,Jinjin Chen,Malvika Kharbanda,Xinyi Jin,Ning Liu,Kristen Feher,Givanna Putri,Wayne D. Tilley,Theresa E. Hickey,Marie-Liesse Asselin-Labat,Belinda Phipson &Melissa J. Davis