opt-SNE datasets

Data files referenced within the opt-SNE preprint (https://doi.org/10.1101/451690) are available for download belowFlow18parameter18 parameter fluorescent flow cytometry file from http://doi.wiley.com/10.1002/cyto.a.22983.flow18_annotated.fcs - an FCS file with all original channels. An extra channel is included that identifies cell types assigned by expert gating. The data are compensated and all fluorescent parameters scaled by the function asinh(x/150).flow18_for_optsne.csv - the data from above but converted to a CSV file that can be used as input to the open-source Multicore-opt-SNE package. Only channels used for opt-SNE analysis are included in the file. Note that the events are sorted by class ID, so if subsetting the file it is recommended to randomize the row order beforehand.tsne_results_flow18.csv - an example of opt-SNE results for the Flow18parameter dataset.Mass41parameter41 parameter mass cytometry dataset from https://doi.org/10.1126/science.1198704.mass41_annotated.fcs - an FCS file produced by concatenation of multiple files from the original dataset. An extra channel is included that identifies cell types assigned by expert gating. An additional extra channel identifies file of origin. All mass parameters are scaled by the function asinh(x/5).mass41_for_optsne.csv - the data from above but converted to a CSV file that can be used as input to the open-source Multicore-opt-SNE package. Only channels used for opt-SNE analysis are included in the file. Note that the events are sorted by class ID, so if subsetting the file it is recommended to randomize the row order beforehand.tsne_results_mass41.csv - an example of opt-SNE results for the Mass41parameter dataset.优化版t分布邻域嵌入（opt-SNE）预印本（https://doi.org/10.1101/451690）中引用的数据文件可在下方获取： Flow18参数荧光流式细胞术文件（源自http://doi.wiley.com/10.1002/cyto.a.22983）： flow18_annotated.fcs：包含全部原始通道的流式细胞术标准文件（FCS，Flow Cytometry Standard），额外新增一个通道，用于标记经专家设门鉴定的细胞类型。该数据已完成荧光补偿，所有荧光参数均通过asinh(x/150)函数进行缩放。 flow18_for_optsne.csv：上述数据转换为逗号分隔值（CSV）格式的文件，可作为开源Multicore-opt-SNE包的输入文件。该文件仅包含opt-SNE分析所需的通道。请注意，数据事件已按类别ID排序，若需对该文件进行子集截取，建议预先对行顺序进行随机化处理。 tsne_results_flow18.csv：Flow18参数数据集的opt-SNE分析结果示例文件。 Mass41参数质谱流式细胞术数据集（源自https://doi.org/10.1126/science.1198704）： mass41_annotated.fcs：由原始数据集的多个文件合并生成的流式细胞术标准文件（FCS），额外新增两个通道：一个用于标记经专家设门鉴定的细胞类型，另一个用于标记数据来源文件。所有质谱参数均通过asinh(x/5)函数进行缩放。 mass41_for_optsne.csv：上述数据转换为逗号分隔值（CSV）格式的文件，可作为开源Multicore-opt-SNE包的输入文件。该文件仅包含opt-SNE分析所需的通道。请注意，数据事件已按类别ID排序，若需对该文件进行子集截取，建议预先对行顺序进行随机化处理。 tsne_results_mass41.csv：Mass41参数数据集的opt-SNE分析结果示例文件。