High-confidence CRP binding sites on the ETEC H10407 chromosome identified by ChIP-seq.

aChomosome coordinate of the ChIP-seq peak in H10407. Underlined text indicates that the ChIP-seq peak maps to sequence that is not conserved in E. coli K-12. bCRP binding site sequence predicted by MEME. “n.d.” indicates that MEME did not detect a putative binding site. cGenes in parentheses indicate that the ChIP-seq peak is located within that gene. Downstream genes are only listed if the annotated gene start is ≤300 bp downstream of the CRP ChIP-seq peak. “n.a.” indicates that no genes starts are ≤300 bp from the CRP ChIP-seq peak. dE. coli K-12 homologues are listed for the ETEC genes in the previous column. Genes in parentheses indicate that the ChIP-seq peak is located within that gene. “n.a.” indicates that no genes starts are ≤300 bp from the CRP ChIP-seq peak. “ETEC-specific” indicates that there is no K-12 homologue. Underlined genes have been identified as CRP targets in a previous ChIP-chip study [15]. Bold genes are listed as CRP targets in the Ecocyc database. High-confidence CRP binding sites on the ETEC H10407 chromosome identified by ChIP-seq.