Data from: HiMAP: robust phylogenomics from highly multiplexed amplicon sequencing

amplicon_alignments_ntamplicon alignments in nucleotide spaceamplicon_alignments_pepamplicon alignments in peptide spaceASTRAL_INPUT_all_raxml_genetreesinput trees for ASTRAL analysisASTRAL_INPUT_CONFIG_spp_indsRmvdconfig file for ASTRAL analysisEXABAYES_INPUT_CONFIG_configconfig file for EXABAYES analysisFigureS1-S6Supplemental figures S1-S6Full_HiMAP_part01_inputfull input for HiMAP part01Full_HiMAP_part02_inputfull input for HiMAP part02OrthoMCL_inputfull input for OrthoMCLPARTITIONFINDER_INPUT_CONFIG_partition_finder_ntconfig file for PartitionFinder (nucleotide space)PARTITIONFINDER_INPUT_CONFIG_partition_finder_pepconfig file for PartitionFinder (peptide space)POMO_INPUT_Teph3_878genes_cutInds100_cutGenes200input file for POMO analysisSVDQUARTETS_INPUT_Teph3_878genes_cutInds100_cutGenes200_svdq_noLoginput file for SVDquartets analysisTables_S1-S5Supplemental tables S1-S5Teph3_878genes_cutInds100_cutGenes200_Peptidesconcatenated alignment (peptide space)Teph3_878genes_cutInds100_cutGenes200concatenated alignment (nucleotide space)Dupuis_10.5061_dryad.6524f