The regulatory landscape of the yeast phosphoproteome

Supplementary Table 1: Treatment, sample preparation and measurement information for all analyzed samples. Supplementary Table 2: Ultra-deep reference yeast phosphoproteome. Supplementary Table 3: Complete and not batch corrected, quantitative phosphosite datasets. Supplementary Table 4: Proteome quantitation of 30 selected perturbations and differential expression of proteins versus untreated. Supplementary Table 5: Batch corrected quantitative core phosphoproteome dataset. Supplementary Table 6: Differential expression of phosphosites in all perturbations versus the untreated control. Supplementary Table 7: Perturbation-specific phosphosites. Supplementary Table 8: Phosphosites associated with TOR subnetworks. Supplementary Table 9: Catalog of characterized, co-regulated phosphosites, assembled in modules.补充表1：所有分析样本的处理、样本制备及检测信息。补充表2：超深度参考酵母磷酸化蛋白质组。补充表3：未进行批次校正的完整定量磷酸化位点数据集。补充表4：30个选定扰动条件下的蛋白质组定量结果，以及与未处理组相比的蛋白质差异表达数据。补充表5：经批次校正的核心定量磷酸化蛋白质组数据集。补充表6：所有扰动条件下与未处理对照组相比的磷酸化位点差异表达数据。补充表7：扰动特异性磷酸化位点。补充表8：与TOR（Target of Rapamycin，雷帕霉素靶蛋白）子网相关的磷酸化位点。补充表9：已鉴定的共调控磷酸化位点目录，按模块形式整合。