NanoRTax pipeline output

This data consist of the NanoRTax (https://github.com/genomicsITER/NanoRTax) pipeline output for the 31 ICU tracheal aspirate samples analyzed in the complementary study. Taxonomic classification is based on Kraken2 tool with the NCBI RefSeq database containing only bacterial genomes. Reports show the number of reads assigned to an specific taxon at multiple levels. Diversity reports include total read count, Shannon and Simpson diversity indexes. Annotated reports and Kraken original report are also available.

本数据集为补充研究中分析的31份重症监护病房（ICU）气管抽吸物样本的NanoRTax（https://github.com/genomicsITER/NanoRTax）分析流程输出结果。其物种分类学鉴定基于仅收录细菌基因组的NCBI RefSeq数据库与Kraken2工具。各类报告展示了多个分类学层级下，被分配至特定分类单元的测序读段数量。多样性分析报告涵盖总测序读段计数、香农（Shannon）多样性指数与辛普森（Simpson）多样性指数。此外，经注释的分析报告与Kraken原始报告亦可供获取。