Additional file 7 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Additional file 7: Table S1. A list of gene markers for fibroblasts when near tumor subclone 1 as opposed to tumor subclone 2 as found by niche-DE. Table S2. A list of gene markers for fibroblasts when near tumor subclone 2 as opposed to tumor subclone 1 as found by niche-DE. Table S3. The list of enriched pathways found by enrichR using the gene list in table S1. Table S4. The list of enriched pathways found by enrichR using the gene list in table S2.