Coupled LEM Bio Datasets

This repository contains the model simulation results used in the study “Direct effects of mountain uplift and topography on biodiversity” by Eyal Marder, Tara M. Smiley, Brian J. Yanites, and Katherine Kravitz, published in Science (2025). The dataset includes 3D mountain-building simulations spanning 20 million years, coupled with biological population dynamics(NetCDF files). Additionally, it provides final dataframes detailing individuals’ traits and phylogenetic data (pkl files).

For the simulation codes, modified modules, and plotting scripts, please refer to Version 2, available at https://doi.org/10.5281/zenodo.15033903

本代码仓库收录了Eyal Marder、Tara M. Smiley、Brian J. Yanites与Katherine Kravitz于2025年发表于《科学》（Science）的论文《山地抬升与地形对生物多样性的直接影响》中所使用的模型模拟结果。本数据集涵盖了跨度达2000万年的三维山地形成模拟结果，并耦合了以网络通用数据格式（NetCDF）存储的生物种群动态数据。此外，数据集还提供了包含个体性状详情的最终数据框以及系统发育数据，二者均以Pickle格式（pkl）存储。
若需获取模拟代码、修改后的模块及绘图脚本，请参阅Zenodo平台上DOI为10.5281/zenodo.15033903的版本2。