Additional file 1: Correlation of ATLs computed from PacBio and ONT datasets for HG002, using different methods for choosing a representative ATL from length distributions.
Output files of RepeatModeler2 and RepeatMasker. The fasta file (new_Acj.fa) and stk (new_Acj.stk) file contains consensus sequences of transposable elements in Apis cerana japinica from Repe
Additional file 2: Table S2. List of isolates, corresponding metadata, and accession numbers. The strain list for the Japanese B. cereus group isolates used in the present study is shown.